PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 366aa    MW: 40625.1 Da    PI: 5.619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008238.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.4e-07172200330
                 HHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS
         HLH   3 rahnerErrRRdriNsafeeLrellPk.a 30 
                 ++h   ErrR +++N+ f  L++l+P+  
  Do008238.1 172 KNHVVSERRRQEKLNEMFLILKSLVPTiH 200
                 68999*********************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.39E-8172224No hitNo description
SuperFamilySSF474591.44E-11172235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-12173232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-5175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNTTVAFSRG CRRWGTRSNL TEQADNAIVL LDDLDDENAM ETMIDEGRHE LAGEVDCLFN  60
TNLEQITKEI DDFYALREEL DVQPLAESSW MMDSPYLVAA PEAKDAATQS VPGDSSHVTS  120
FRAWTMPRSD DWLAVPVIGE PQKLLKKVVS GGAWMNNGCE SAGRMAQESG SKNHVVSERR  180
RQEKLNEMFL ILKSLVPTIH GQSIHPWLLA ETVAYLRELE QKVQELESSR GHVARLAGET  240
MLGCHDNEIT GKRVSAAKRK KPSELNGNME REQEHHWVLS KDGASHVINV SVTGTEVLVQ  300
VQCRWKELLM ARVFDAIKNL HLVVLSVQAS TPNGLLGLKI QAQFASSSTV APGMIREALQ  360
KAISNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970877.11e-108PREDICTED: anthocyanin regulatory R-S protein-like
SwissprotP130273e-79ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLK3YDU31e-109K3YDU3_SETIT; Uncharacterized protein
STRINGSi012401m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-29bHLH family protein